ENSG00000007314


Homo sapiens

Features
Gene ID: ENSG00000007314
  
Biological name :SCN4A
  
Synonyms : P35499 / SCN4A / sodium voltage-gated channel alpha subunit 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q23.3
Gene start: 63938554
Gene end: 63972918
  
Corresponding Affymetrix probe sets: 206981_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000396320
NCBI entrez gene - 6329     See in Manteia.
OMIM - 603967
RefSeq - NM_000334
RefSeq Peptide - NP_000325
swissprot - P35499
Ensembl - ENSG00000007314
  
Related genetic diseases (OMIM): 168300 - Paramyotonia congenita, 168300
  170500 - Hyperkalemic periodic paralysis, type 2, 170500
  608390 - Myotonia congenita, atypical, acetazolamide-responsive, 608390
  613345 - Hypokalemic periodic paralysis, type 2, 613345
  614198 - Myasthenic syndrome, congenital, 16, 614198
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn4aaENSDARG00000098738Danio rerio
 scn4abENSDARG00000034588Danio rerio
 SCN4AENSGALG00000034427Gallus gallus
 Scn4aENSMUSG00000001027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN2A / Q99250 / sodium voltage-gated channel alpha subunit 2ENSG0000013653171
SCN3A / Q9NY46 / sodium voltage-gated channel alpha subunit 3ENSG0000015325369
SCN1A / P35498 / sodium voltage-gated channel alpha subunit 1ENSG0000014428569
SCN8A / Q9UQD0 / sodium voltage-gated channel alpha subunit 8ENSG0000019687668
SCN9A / Q15858 / sodium voltage-gated channel alpha subunit 9ENSG0000016943268
SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5ENSG0000018387365
Q9Y5Y9 / SCN10A / sodium voltage-gated channel alpha subunit 10ENSG0000018531358
Q9UI33 / SCN11A / sodium voltage-gated channel alpha subunit 11ENSG0000016835648
SCN7A / Q01118 / sodium voltage-gated channel alpha subunit 7ENSG0000013654646
Q9P0X4 / CACNA1I / calcium voltage-gated channel subunit alpha1 IENSG0000010034625
O95180 / CACNA1H / calcium voltage-gated channel subunit alpha1 HENSG0000019655725
O43497 / CACNA1G / calcium voltage-gated channel subunit alpha1 GENSG0000000628324


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR008052  Voltage gated sodium channel, alpha-4 subunit, mammalian
 IPR010526  Sodium ion transport-associated


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport TAS
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0086010 membrane depolarization during action potential IBA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity TAS
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000544 External ophthalmoplegia 
Show

 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
Show

 HP:0000821 Hypothyroidism 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001270 Motor retardation 
Show

 HP:0001276 Hypertonia 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001315 Reduced reflexes 
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001371 Contractures 
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001522 Death in infancy 
Show

 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002094 Dyspnea 
Show

 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002153 Hyperkalemia 
Show

 HP:0002203 Respiratory paralysis 
Show

 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
Show

 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
Show

 HP:0002607 Bowel incontinence 
Show

 HP:0002900 Hypokalemia 
Show

 HP:0002902 Hyponatremia 
Show

 HP:0003198 Myopathy 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003236 Elevated serum creatine phosphokinase 
Show

 HP:0003307 Hyperlordosis 
Show

 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
Show

 HP:0003388 Easy fatigability 
Show

 HP:0003394 Muscle cramps 
Show

 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
Show

 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
Show

 HP:0003473 Mild-moderate fatigable weakness of limb muscles 
Show

 HP:0003552 Muscle stiffness 
Show

 HP:0003593 Early onset 
Show

 HP:0003694 Proximal muscle weakness occurs later "Lack of strength of the proximal musculature occuring late in the clinical course." [HPO:curators]
Show

 HP:0003712 Muscle hypertrophy "Hypertrophy (increase in size) of muscle cells (as opposed to hyperplasia, which refers to an increase in the number of muscle cells)." [HPO:curators]
Show

 HP:0003720 Generalized muscle hypertrophy "Hypertrophy (increase in size) of muscle cells in a generalized (not localized) distribution." [HPO:curators]
Show

 HP:0003752 Flaccid weakness or paralysis, episodic attacks 
Show

 HP:0003768 Periodic paralysis 
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0003828 Variable expressivity 
Show

 HP:0003829 Incomplete penetrance 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005348 Inspiratory stridor "Inspiratory stridor is a high pitched sound upon inspiration that is generally related to laryngeal abnormalities." [HPO:curators]
Show

 HP:0005949 Apneic episodes in infancy "Recurrent episodes of apnea occurring during infancy." [HPO:curators]
Show

 HP:0007215 Secondary hyperkalemic periodic paralysis 
Show

 HP:0008153 Periodic hypokalemic paresis 
Show

 HP:0008180 Mildly elevated creatine phosphokinase 
Show

 HP:0008256 Adrenocortical adenoma "Adrenocortical adenomas are benign tumors of the adrenal cortex." [HPO:curators]
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0009020 Exercise-induced muscle fatigue "An abnormally increased tendency towards muscle fatigue induced by physical exercise." [HPO:curators]
Show

 HP:0010307 Stridor "Stridor is a high pitched sound resulting from turbulent air flow in the upper airway." [HPO:curators]
Show

 HP:0010548 Percussion myotonia "A localized myotonic contraction in a muscle in reaction to percussion (tapping with the examiner s finger, a rubber percussion hammer, or a similar object)." [HPO:curators]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

 HP:0011809 Paradoxical myotonia "A type of myotonia that worsens with repeated muscle contractions." [HPO:probinson, pmid:7678441]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0011998 Postprandial hyperglycemia "An `increased concentration` (PATO:0001162) of `glucose` (CHEBI:17234) in the `blood` (FMA:9670) following a meal." [HPO:probinson]
Show

 HP:0012240 Increased intramyocellular lipid droplets "An abnormal increase in intracellular lipid droplets In a muscle. The number and size of these drops can increase with somd disorders of lipid metabolism affecting muscle. See pmid 20691590 for histological images." [HPO:probinson, pmid:20691590]
Show

 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
Show

 HP:0012726 Episodic hypokalemia "An abnormally decreased potassium concentration in the blood occurring periodically with a return to normal between the episodes." [HPO:probinson]
Show

 HP:0012899 Handgrip myotonia "Difficulty releasing one s grip associated with prolonged first handgrip relaxation times." [pmid:22987687, UToronto:htrang]
Show

 HP:0025425 Laryngospasm "A spasm (involuntary contraction) of the vocal cords that can make it difficult to speak or breathe." []
Show

 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
Show

 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
Show

 HP:0100613 Death in early adulthood 
Show

 HP:0100748 Muscular edema 
Show

 HP:0100749 Chest pain 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr