ENSG00000144285


Homo sapiens

Features
Gene ID: ENSG00000144285
  
Biological name :SCN1A
  
Synonyms : P35498 / SCN1A / sodium voltage-gated channel alpha subunit 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q24.3
Gene start: 165984641
Gene end: 166149214
  
Corresponding Affymetrix probe sets: 1555246_a_at (Human Genome U133 Plus 2.0 Array)   210383_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000490288
Ensembl peptide - ENSP00000490184
Ensembl peptide - ENSP00000490612
Ensembl peptide - ENSP00000493054
Ensembl peptide - ENSP00000492945
Ensembl peptide - ENSP00000492917
Ensembl peptide - ENSP00000491573
Ensembl peptide - ENSP00000490895
Ensembl peptide - ENSP00000490799
Ensembl peptide - ENSP00000490780
Ensembl peptide - ENSP00000490692
Ensembl peptide - ENSP00000303540
Ensembl peptide - ENSP00000364554
Ensembl peptide - ENSP00000386312
Ensembl peptide - ENSP00000407030
Ensembl peptide - ENSP00000489986
NCBI entrez gene - 6323     See in Manteia.
OMIM - 182389
RefSeq - XM_017004654
RefSeq - NM_001165963
RefSeq - NM_001165964
RefSeq - NM_001202435
RefSeq - NM_001353949
RefSeq - NM_001353950
RefSeq - NM_001353951
RefSeq - NM_001353952
RefSeq - NM_001353954
RefSeq - NM_001353961
RefSeq - NM_006920
RefSeq - XM_011511602
RefSeq - XM_011511604
RefSeq - XM_011511605
RefSeq - XM_011511606
RefSeq - XM_017004644
RefSeq - XM_017004645
RefSeq - XM_017004646
RefSeq - XM_017004647
RefSeq - XM_017004648
RefSeq - XM_017004649
RefSeq - XM_017004650
RefSeq - XM_017004651
RefSeq - XM_017004652
RefSeq - XM_017004653
RefSeq Peptide - NP_001340879
RefSeq Peptide - NP_001340884
RefSeq Peptide - NP_001340886
RefSeq Peptide - NP_001340887
RefSeq Peptide - NP_001340890
RefSeq Peptide - NP_008851
RefSeq Peptide - NP_001159435
RefSeq Peptide - NP_001159436
RefSeq Peptide - NP_001189364
RefSeq Peptide - NP_001340877
RefSeq Peptide - NP_001340878
RefSeq Peptide - NP_001340880
RefSeq Peptide - NP_001340881
RefSeq Peptide - NP_001340883
swissprot - A0A286YF26
swissprot - A0A286YEQ8
swissprot - A0A1W2PPJ3
swissprot - A0A1B0GWE6
swissprot - A0A1B0GVX7
swissprot - A0A1B0GUX7
swissprot - A0A1B0GUN7
swissprot - A0A1B0GU68
swissprot - A0A286YFA8
swissprot - P35498
Ensembl - ENSG00000144285
  
Related genetic diseases (OMIM): 604403 - Epilepsy, generalized, with febrile seizures plus, type 2, 604403
  607208 - Epileptic encephalopathy, early infantile, 6 (Dravet syndrome), 607208
  609634 - Migraine, familial hemiplegic, 3, 609634
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn1aENSDARG00000086819Danio rerio
 scn1labENSDARG00000062744Danio rerio
 SCN1AENSGALG00000010943Gallus gallus
 Scn1aENSMUSG00000064329Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN2A / Q99250 / sodium voltage-gated channel alpha subunit 2ENSG0000013653188
SCN3A / Q9NY46 / sodium voltage-gated channel alpha subunit 3ENSG0000015325384
SCN9A / Q15858 / sodium voltage-gated channel alpha subunit 9ENSG0000016943276
SCN8A / Q9UQD0 / sodium voltage-gated channel alpha subunit 8ENSG0000019687676
SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5ENSG0000018387363
SCN4A / P35499 / sodium voltage-gated channel alpha subunit 4ENSG0000000731463
Q9Y5Y9 / SCN10A / sodium voltage-gated channel alpha subunit 10ENSG0000018531356
Q9UI33 / SCN11A / sodium voltage-gated channel alpha subunit 11ENSG0000016835646
SCN7A / Q01118 / sodium voltage-gated channel alpha subunit 7ENSG0000013654644
O95180 / CACNA1H / calcium voltage-gated channel subunit alpha1 HENSG0000019655725
O43497 / CACNA1G / calcium voltage-gated channel subunit alpha1 GENSG0000000628324
Q9P0X4 / CACNA1I / calcium voltage-gated channel subunit alpha1 IENSG0000010034623


Protein motifs (from Interpro)
Interpro ID Name
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR008051  Voltage gated sodium channel, alpha-1 subunit
 IPR010526  Sodium ion transport-associated
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR024583  Voltage-gated Na+ ion channel, cytoplasmic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport NAS
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0019227 neuronal action potential propagation IEA
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0042391 regulation of membrane potential IEA
 biological_processGO:0050884 neuromuscular process controlling posture IEA
 biological_processGO:0050966 detection of mechanical stimulus involved in sensory perception of pain ISS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0086002 cardiac muscle cell action potential involved in contraction IMP
 biological_processGO:0086010 membrane depolarization during action potential IBA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0014704 intercalated disc IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030018 Z disc ISS
 cellular_componentGO:0030315 T-tubule IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0033268 node of Ranvier IEA
 cellular_componentGO:0034706 sodium channel complex IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043194 axon initial segment IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity NAS
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000752 Hyperactivity 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002077 Migraine with aura 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002266 Focal clonic seizures 
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002357 Dysphasia 
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 HP:0002363 Abnormality of the brainstem 
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0002527 Falls 
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 HP:0003593 Early onset 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0005484 Microcephaly, postnatal 
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 HP:0006813 Unilateral clonic seizures 
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 HP:0007270 Atypical absence seizures 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010818 Tonic seizures "A type of `seizure` (HP:0001250) characterized by a sudden increase in muscle tone whereby the body, arms, or legs make sudden stiffening movements and consciousness is usually preserved. Tonic seizures can occur during sleep. Tonic seizures usually affect both sides of the body, and cause a fall if the affected person was standing when the seizure started." [HPO:probinson]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0011195 EEG with focal sharp slow waves "EEG with focal sharp transient waves of a duration between 80 and 200 msec followed by a slow wave." [HPO:jalbers]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0012075 Personality disorder "An abnormality of mental functioning affecting the personality and behavioural tendencies of an individual and characterized by a rigid and unhealthy pattern of thinking and behavior. The definition of a personal disorder implies that the abnormality is not the result of damage or insult to the brain or from another psychiatric disorder." [HPO:probinson]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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