ENSG00000136531


Homo sapiens

Features
Gene ID: ENSG00000136531
  
Biological name :SCN2A
  
Synonyms : Q99250 / SCN2A / sodium voltage-gated channel alpha subunit 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q24.3
Gene start: 165194993
Gene end: 165392310
  
Corresponding Affymetrix probe sets: 206381_at (Human Genome U133 Plus 2.0 Array)   229057_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489821
Ensembl peptide - ENSP00000489873
Ensembl peptide - ENSP00000490866
Ensembl peptide - ENSP00000490849
Ensembl peptide - ENSP00000490800
Ensembl peptide - ENSP00000490765
Ensembl peptide - ENSP00000490592
Ensembl peptide - ENSP00000490107
Ensembl peptide - ENSP00000283256
Ensembl peptide - ENSP00000364576
Ensembl peptide - ENSP00000364586
Ensembl peptide - ENSP00000406454
Ensembl peptide - ENSP00000486885
Ensembl peptide - ENSP00000487466
NCBI entrez gene - 6326     See in Manteia.
OMIM - 182390
RefSeq - NM_021007
RefSeq - XM_017004658
RefSeq - XM_017004657
RefSeq - XM_017004656
RefSeq - XM_017004655
RefSeq - XM_005246755
RefSeq - XM_005246753
RefSeq - NM_001040142
RefSeq - NM_001040143
RefSeq Peptide - NP_001035232
RefSeq Peptide - NP_001035233
RefSeq Peptide - NP_066287
swissprot - A0A1B0GW67
swissprot - Q99250
swissprot - F6U291
swissprot - A0A0D9SGG2
swissprot - A0A1B0GTS6
swissprot - A0A1B0GTX0
swissprot - A0A1B0GWA6
swissprot - A0A1B0GW40
Ensembl - ENSG00000136531
  
Related genetic diseases (OMIM): 607745 - Seizures, benign familial infantile, 3, 607745
  613721 - Epileptic encephalopathy, early infantile, 11, 613721
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn1aENSDARG00000086819Danio rerio
 scn1labENSDARG00000062744Danio rerio
 SCN2AENSGALG00000011009Gallus gallus
 Scn2aENSMUSG00000075318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN1A / P35498 / sodium voltage-gated channel alpha subunit 1ENSG0000014428588
SCN3A / Q9NY46 / sodium voltage-gated channel alpha subunit 3ENSG0000015325387
SCN9A / Q15858 / sodium voltage-gated channel alpha subunit 9ENSG0000016943278
SCN8A / Q9UQD0 / sodium voltage-gated channel alpha subunit 8ENSG0000019687676
SCN4A / P35499 / sodium voltage-gated channel alpha subunit 4ENSG0000000731465
SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5ENSG0000018387364
Q9Y5Y9 / SCN10A / sodium voltage-gated channel alpha subunit 10ENSG0000018531357
Q9UI33 / SCN11A / sodium voltage-gated channel alpha subunit 11ENSG0000016835646
SCN7A / Q01118 / sodium voltage-gated channel alpha subunit 7ENSG0000013654645
O95180 / CACNA1H / calcium voltage-gated channel subunit alpha1 HENSG0000019655725
O43497 / CACNA1G / calcium voltage-gated channel subunit alpha1 GENSG0000000628324
Q9P0X4 / CACNA1I / calcium voltage-gated channel subunit alpha1 IENSG0000010034624


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR010526  Sodium ion transport-associated
 IPR024583  Voltage-gated Na+ ion channel, cytoplasmic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport TAS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008627 intrinsic apoptotic signaling pathway in response to osmotic stress IEA
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport ISS
 biological_processGO:0042552 myelination ISS
 biological_processGO:0051402 neuron apoptotic process IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0086010 membrane depolarization during action potential IBA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0014704 intercalated disc IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030315 T-tubule IEA
 cellular_componentGO:0030424 axon TAS
 cellular_componentGO:0031226 intrinsic component of plasma membrane ISS
 cellular_componentGO:0033268 node of Ranvier ISS
 cellular_componentGO:0033270 paranode region of axon IEA
 cellular_componentGO:0034706 sodium channel complex ISS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity TAS
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000961 Cyanosis 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001266 Choreoathetosis 
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 HP:0001276 Hypertonia 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002076 Migraine 
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002266 Focal clonic seizures 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002372 Normal interictal EEG 
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003828 Variable expressivity 
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 HP:0004372 Reduced consciousness/confusion 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0011121 Abnormality of skin morphology "Any morphological abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0011146 Dialeptic seizures "Seizures characterized by impaired consciousness." [HPO:ihelbig]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012469 Infantile spasms "Infantile spasms represent a subset of "epileptic spasms". Infantile Spasms are epileptic spasms starting in the first year of life (infancy)." [HPO:ihelbig]
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 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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 HP:0040168 Focal seizures, afebril 
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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