ENSG00000196876


Homo sapiens

Features
Gene ID: ENSG00000196876
  
Biological name :SCN8A
  
Synonyms : Q9UQD0 / SCN8A / sodium voltage-gated channel alpha subunit 8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 51590266
Gene end: 51812864
  
Corresponding Affymetrix probe sets: 1561820_at (Human Genome U133 Plus 2.0 Array)   207049_at (Human Genome U133 Plus 2.0 Array)   235969_at (Human Genome U133 Plus 2.0 Array)   236329_at (Human Genome U133 Plus 2.0 Array)   237790_at (Human Genome U133 Plus 2.0 Array)   244708_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486828
Ensembl peptide - ENSP00000487583
Ensembl peptide - ENSP00000492157
Ensembl peptide - ENSP00000490580
Ensembl peptide - ENSP00000490470
Ensembl peptide - ENSP00000346534
Ensembl peptide - ENSP00000347255
Ensembl peptide - ENSP00000440360
Ensembl peptide - ENSP00000447567
Ensembl peptide - ENSP00000476447
NCBI entrez gene - 6334     See in Manteia.
OMIM - 600702
RefSeq - XM_017019795
RefSeq - XM_011538650
RefSeq - XM_006719556
RefSeq - XM_017019794
RefSeq - NM_001177984
RefSeq - NM_001330260
RefSeq - NM_014191
RefSeq - XM_017019796
RefSeq - XM_011538651
RefSeq Peptide - NP_001317189
RefSeq Peptide - NP_001171455
RefSeq Peptide - NP_055006
swissprot - Q9UQD0
swissprot - A0A1W2PQI5
swissprot - F8W0Q0
swissprot - A0A1B0GVD4
swissprot - A0A1B0GVM8
Ensembl - ENSG00000196876
  
Related genetic diseases (OMIM): 614306 - ?Cognitive impairment with or without cerebellar ataxia, 614306
  614558 - Epileptic encephalopathy, early infantile, 13, 614558
  617080 - Seizures, benign familial infantile, 5, 617080
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn8aaENSDARG00000005775Danio rerio
 scn8abENSDARG00000018032Danio rerio
 SCN8AENSGALG00000043728Gallus gallus
 Scn8aENSMUSG00000023033Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN1A / P35498 / sodium voltage-gated channel alpha subunit 1ENSG0000014428577
SCN2A / Q99250 / sodium voltage-gated channel alpha subunit 2ENSG0000013653177
SCN3A / Q9NY46 / sodium voltage-gated channel alpha subunit 3ENSG0000015325375
SCN9A / Q15858 / sodium voltage-gated channel alpha subunit 9ENSG0000016943271
SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5ENSG0000018387364
SCN4A / P35499 / sodium voltage-gated channel alpha subunit 4ENSG0000000731463
Q9Y5Y9 / SCN10A / sodium voltage-gated channel alpha subunit 10ENSG0000018531356
Q9UI33 / SCN11A / sodium voltage-gated channel alpha subunit 11ENSG0000016835646
SCN7A / Q01118 / sodium voltage-gated channel alpha subunit 7ENSG0000013654643
O95180 / CACNA1H / calcium voltage-gated channel subunit alpha1 HENSG0000019655725
O43497 / CACNA1G / calcium voltage-gated channel subunit alpha1 GENSG0000000628324
Q9P0X4 / CACNA1I / calcium voltage-gated channel subunit alpha1 IENSG0000010034623


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR008054  Voltage gated sodium channel, alpha-8 subunit
 IPR010526  Sodium ion transport-associated
 IPR024583  Voltage-gated Na+ ion channel, cytoplasmic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport NAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007422 peripheral nervous system development ISS
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0042552 myelination ISS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0086010 membrane depolarization during action potential IBA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IC
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0030018 Z disc ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0033268 node of Ranvier ISS
 cellular_componentGO:0043194 axon initial segment ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity NAS
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000712 Emotional lability 
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 HP:0000717 Autism 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000738 Hallucinations 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001266 Choreoathetosis 
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 HP:0001276 Hypertonia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002059 Cerebral atrophy 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002076 Migraine 
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 HP:0002197 Generalized seizures "Recurrent generalized `seizures` (HP:0001250), that is seizures that affect both cerebral hemispheres from the start of the seizure, producing loss of consciousness." [HPO:probinson]
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002372 Normal interictal EEG 
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 HP:0002376 Developmental regression 
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 HP:0004372 Reduced consciousness/confusion 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007098 Choreoathetosis, paroxysmal 
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 HP:0007166 Involuntary dystonic or choreiform movements 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0011097 Epileptic spasms "A sudden flexion, extension or mixed extension-flexion of predominantly proximal and truncal muscles which is usually more sustained than a myoclonic movement but not as sustained as a tonic seizure." [HPO:jalbers]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
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 HP:0025312 Esophoria "A form of strabismus with both eyes turned inward to a relatively mild degree, usually defined as less than 10 prism diopters." []
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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