ENSDARG00000070437


Danio rerio

Features
Gene ID: ENSDARG00000070437
  
Biological name :rpl22
  
Synonyms : ribosomal protein L22 / rpl22
  
Possible biological names infered from orthology : P35268 / P67984
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 29650011
Gene end: 29658396
  
Corresponding Affymetrix probe sets: Dr.1441.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111487
Ensembl peptide - ENSDARP00000146022
swissprot - F1QG80
ZFIN ID - ZDB-GENE-051113-276
Ensembl - ENSDARG00000070437
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL22ENSGALG00000000719Gallus gallus
 RPL22ENSG00000116251Homo sapiens
 Rpl22ENSMUSG00000028936Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpl22l1 / ribosomal protein L22-like 1 / Q6P5R6* / Q9D7S7*ENSDARG0000001024463


Protein motifs (from Interpro)
Interpro ID Name
 IPR002671  Ribosomal protein L22e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0033077 T cell differentiation in thymus IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001078 thymus thymus apoptotic process increased occurrence , abnormal
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 ZFA:0009046 T cell T cell aplastic/hypoplastic , abnormal
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 ZFA:0009335 alpha-beta T cell alpha-beta T cell aplastic/hypoplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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