ENSDARG00000071011


Danio rerio

Features
Gene ID: ENSDARG00000071011
  
Biological name :cdk5r2a
  
Synonyms : cdk5r2a / cyclin-dependent kinase 5, regulatory subunit 2a (p39)
  
Possible biological names infered from orthology : CDK5R2 / Cyclin-dependent kinase 5 activator 2 / cyclin dependent kinase 5 regulatory subunit 2 / O35926 / Q13319
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 13742899
Gene end: 13744681
  
Corresponding Affymetrix probe sets: Dr.6765.1.A1_at (Zebrafish Array)   NM_001017569_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000104135
NCBI entrez gene - 550231     See in Manteia.
RefSeq - NM_001017569
RefSeq Peptide - NP_001017569
swissprot - Q568S1
ZFIN ID - ZDB-GENE-050417-22
Ensembl - ENSDARG00000071011
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDK5R2ENSGALG00000025729Gallus gallus
 CDK5R2ENSG00000171450Homo sapiens
 Cdk5r2ENSMUSG00000090071Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdk5r2b / cyclin-dependent kinase 5, regulatory subunit 2b (p39) / Q13319* / O35926* / CDK5R2* / Cyclin-dependent kinase 5 activator 2 * / cyclin dependent kinase 5 regulatory subunit 2*ENSDARG0000007867165
cdk5r1b / cyclin-dependent kinase 5, regulatory subunit 1b (p35) / Q15078* / P61809* / CDK5R1* / cyclin dependent kinase 5 regulatory subunit 1* / Cyclin-dependent kinase 5 activator 1 Cycl...ENSDARG0000004508755
cdk5r1a / cyclin-dependent kinase 5, regulatory subunit 1a (p35) / Q15078* / P61809* / CDK5R1* / cyclin dependent kinase 5 regulatory subunit 1* / Cyclin-dependent kinase 5 activator 1 Cycl...ENSDARG0000003791654
si:dkeyp-92c9.2ENSDARG0000003610554


Protein motifs (from Interpro)
Interpro ID Name
 IPR004944  Cyclin-dependent kinase 5 activator
 IPR013763  Cyclin-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010842 retina layer formation IMP
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye IMP
 biological_processGO:0071902 positive regulation of protein serine/threonine kinase activity IEA
 cellular_componentGO:0016533 protein kinase 5 complex IEA
 molecular_functionGO:0016534 cyclin-dependent protein kinase 5 activator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000152 retina retina morphology , abnormal
Show

 ZFA:0000435 cranial nerve II cranial nerve II decreased size , abnormal
cranial nerve II morphology , abnormal
Show

 ZFA:0001330 retinal outer plexiform layer retinal outer plexiform layer morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr