ENSDARG00000071573


Danio rerio

Features
Gene ID: ENSDARG00000071573
  
Biological name :lsm5
  
Synonyms : lsm5 / LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : P62322 / Q9Y4Y9
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 13331526
Gene end: 13337037
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000096681
Ensembl peptide - ENSDARP00000121634
Ensembl peptide - ENSDARP00000116972
NCBI entrez gene - 563948     See in Manteia.
RefSeq - NM_001100438
RefSeq Peptide - NP_001093908
swissprot - E9QFA0
swissprot - A7E2L8
ZFIN ID - ZDB-GENE-070822-23
Ensembl - ENSDARG00000071573
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM5ENSGALG00000041625Gallus gallus
 LSM5ENSG00000106355Homo sapiens
 Lsm5ENSMUSG00000091625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR033871  Sm-like protein LSm5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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