ENSG00000106355


Homo sapiens

Features
Gene ID: ENSG00000106355
  
Biological name :LSM5
  
Synonyms : LSM5 / LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated / Q9Y4Y9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p14.3
Gene start: 32485332
Gene end: 32495283
  
Corresponding Affymetrix probe sets: 202903_at (Human Genome U133 Plus 2.0 Array)   202904_s_at (Human Genome U133 Plus 2.0 Array)   211747_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386814
Ensembl peptide - ENSP00000410758
Ensembl peptide - ENSP00000387126
Ensembl peptide - ENSP00000387109
Ensembl peptide - ENSP00000223084
Ensembl peptide - ENSP00000386275
Ensembl peptide - ENSP00000386363
Ensembl peptide - ENSP00000386707
NCBI entrez gene - 23658     See in Manteia.
OMIM - 607285
RefSeq - NM_001130710
RefSeq - NM_001139499
RefSeq - NM_012322
RefSeq Peptide - NP_001132971
RefSeq Peptide - NP_036454
RefSeq Peptide - NP_001124182
swissprot - Q9Y4Y9
swissprot - A0A090N8Y5
swissprot - F8W8Y8
swissprot - B8ZZF8
Ensembl - ENSG00000106355
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm5ENSDARG00000071573Danio rerio
 LSM5ENSGALG00000041625Gallus gallus
 Lsm5ENSMUSG00000091625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR033871  Sm-like protein LSm5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IBA
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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