ENSMUSG00000091625


Mus musculus

Features
Gene ID: ENSMUSG00000091625
  
Biological name :Lsm5
  
Synonyms : Lsm5 / LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated / P62322
  
Possible biological names infered from orthology : Q9Y4Y9
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: B3
Gene start: 56701063
Gene end: 56704710
  
Corresponding Affymetrix probe sets: 10353674 (MoGene1.0st)   10445008 (MoGene1.0st)   10544971 (MoGene1.0st)   1418656_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000135337
Ensembl peptide - ENSMUSP00000145140
Ensembl peptide - ENSMUSP00000144811
Ensembl peptide - ENSMUSP00000126565
NCBI entrez gene - 66373     See in Manteia.
MGI - MGI:1913623
RefSeq - NM_025520
RefSeq Peptide - NP_079796
swissprot - A0A0N4SUT0
swissprot - H3BKC5
swissprot - A0A0N4SVK3
swissprot - P62322
Ensembl - ENSMUSG00000091625
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm5ENSDARG00000071573Danio rerio
 LSM5ENSGALG00000041625Gallus gallus
 LSM5ENSG00000106355Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR033871  Sm-like protein LSm5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006402 mRNA catabolic process ISO
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity ISO


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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