ENSDARG00000073944


Danio rerio

Features
Gene ID: ENSDARG00000073944
  
Biological name :si:ch73-386h18.1
  
Synonyms : si:ch73-386h18.1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 6039141
Gene end: 6083792
  
Corresponding Affymetrix probe sets: Dr.23457.1.S1_s_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000103045
Ensembl peptide - ENSDARP00000113495
NCBI entrez gene - 563768     See in Manteia.
RefSeq - XM_687130
swissprot - F1Q7K3
ZFIN ID - ZDB-GENE-050309-237
Ensembl - ENSDARG00000073944
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfhx3 / zinc finger homeobox 3 / Q15911*ENSDARG0000010305747
zfhx4 / zinc finger homeobox 4 / Q86UP3* / zinc finger homeodomain 4*ENSDARG0000007554240


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR009057  Homeobox-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr