ENSDARG00000103057


Danio rerio

Features
Gene ID: ENSDARG00000103057
  
Biological name :zfhx3
  
Synonyms : zfhx3 / zinc finger homeobox 3
  
Possible biological names infered from orthology : Q15911
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 68214935
Gene end: 68373495
  
Corresponding Affymetrix probe sets: Dr.22957.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000138913
NCBI entrez gene - 100333211     See in Manteia.
RefSeq - XM_021478048
RefSeq - XM_021478047
RefSeq - XM_021478049
RefSeq - XM_021478051
swissprot - A0A0R4ISP1
ZFIN ID - ZDB-GENE-030131-7577
Ensembl - ENSDARG00000103057
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZFHX3ENSGALG00000000713Gallus gallus
 ZFHX3ENSG00000140836Homo sapiens
 Zfhx3ENSMUSG00000038872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfhx4 / zinc finger homeobox 4 / Q86UP3* / zinc finger homeodomain 4*ENSDARG0000007554247
si:ch73-386h18.1ENSDARG0000007394441


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR009057  Homeobox-like domain superfamily
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013087  Zinc finger C2H2-type
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX3 regulates CDKN1A transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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