ENSGALG00000000713


Gallus gallus

Features
Gene ID: ENSGALG00000000713
  
Biological name :ZFHX3
  
Synonyms : ZFHX3 / zinc finger homeobox 3
  
Possible biological names infered from orthology : Q15911
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 19692863
Gene end: 19834198
  
Corresponding Affymetrix probe sets: Gga.17205.1.S1_at (Chicken Array)   Gga.18021.1.S1_at (Chicken Array)   Gga.397.1.S1_at (Chicken Array)   GgaAffx.447.1.S1_at (Chicken Array)   GgaAffx.448.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001007
Ensembl peptide - ENSGALP00000045965
NCBI entrez gene - 395682     See in Manteia.
RefSeq - XM_015292550
RefSeq - NM_001293088
RefSeq - XM_015292548
RefSeq - XM_015292549
RefSeq - XM_015292547
RefSeq Peptide - NP_001280017
swissprot - F1N9R6
Ensembl - ENSGALG00000000713
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zfhx3ENSDARG00000103057Danio rerio
 ZFHX3ENSG00000140836Homo sapiens
 Zfhx3ENSMUSG00000038872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZFHX4 / zinc finger homeobox 4 / Q86UP3* / zinc finger homeodomain 4*ENSGALG0000003716454


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR009057  Homeobox-like domain superfamily
 IPR013087  Zinc finger C2H2-type
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0071559 response to transforming growth factor beta IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX3 regulates CDKN1A transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr