ENSDARG00000074680


Danio rerio

Features
Gene ID: ENSDARG00000074680
  
Biological name :rims1a
  
Synonyms : regulating synaptic membrane exocytosis 1a / rims1a
  
Possible biological names infered from orthology : Q86UR5 / regulating synaptic membrane exocytosis 1 / RIMS1
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 27631926
Gene end: 27767443
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000152045
Ensembl peptide - ENSDARP00000100116
Ensembl peptide - ENSDARP00000119484
Ensembl peptide - ENSDARP00000121847
Ensembl peptide - ENSDARP00000122145
Ensembl peptide - ENSDARP00000122960
Ensembl peptide - ENSDARP00000148160
swissprot - E9QHR1
swissprot - F1QVX7
swissprot - F1R2U5
swissprot - F1R7Z9
swissprot - F1RCJ3
ZFIN ID - ZDB-GENE-090312-135
Ensembl - ENSDARG00000074680
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RIMS1ENSGALG00000015944Gallus gallus
 RIMS1ENSG00000079841Homo sapiens
 Rims1ENSMUSG00000041670Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rims1b / regulating synaptic membrane exocytosis 1b / RIMS1* / Q86UR5* / regulating synaptic membrane exocytosis 1*ENSDARG0000007890258
CR925804.2ENSDARG0000011370233
rims2b / regulating synaptic membrane exocytosis 2b / RIMS2* / Q9UQ26* / Q9EQZ7* / regulating synaptic membrane exocytosis 2* / Regulating synaptic membrane exocytosis protein 2 *ENSDARG0000010269021
rims3 / regulating synaptic membrane exocytosis 3 / Q80U57* / Q9UJD0*ENSDARG0000006230514
rims2a / regulating synaptic membrane exocytosis 2a / RIMS2* / Q9UQ26* / Q9EQZ7* / regulating synaptic membrane exocytosis 2* / Regulating synaptic membrane exocytosis protein 2 *ENSDARG0000010160614
rims4 / regulating synaptic membrane exocytosis 4 / Q9H426*ENSDARG0000005952312


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001478  PDZ domain
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR030630  Regulating synaptic membrane exocytosis protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 biological_processGO:2000300 regulation of synaptic vesicle exocytosis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0048786 presynaptic active zone IBA
 molecular_functionGO:0017137 Rab GTPase binding IEA
 molecular_functionGO:0044325 ion channel binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Glutamate Neurotransmitter Release Cycle
Acetylcholine Neurotransmitter Release Cycle
GABA synthesis, release, reuptake and degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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