ENSDARG00000074758


Danio rerio

Features
Gene ID: ENSDARG00000074758
  
Biological name :csde1
  
Synonyms : cold shock domain containing E1, RNA-binding / csde1
  
Possible biological names infered from orthology : cold shock domain containing E1 / Cold shock domain-containing protein E1 / O75534 / Q91W50
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 22521729
Gene end: 22542545
  
Corresponding Affymetrix probe sets: Dr.25683.3.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000155984
Ensembl peptide - ENSDARP00000156947
Ensembl peptide - ENSDARP00000156900
Ensembl peptide - ENSDARP00000112965
Ensembl peptide - ENSDARP00000116278
Ensembl peptide - ENSDARP00000116773
NCBI entrez gene - 336679     See in Manteia.
RefSeq - NM_001199436
RefSeq Peptide - NP_001186365
swissprot - E9QFH8
swissprot - E9QCU5
swissprot - F1R386
ZFIN ID - ZDB-GENE-030131-8623
Ensembl - ENSDARG00000074758
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSDE1ENSGALG00000002139Gallus gallus
 CSDE1ENSG00000009307Homo sapiens
 Csde1ENSMUSG00000068823Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-121d4.3ENSDARG0000008935521


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site
 IPR024642  SUZ-C domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr