ENSGALG00000002139


Gallus gallus

Features
Gene ID: ENSGALG00000002139
  
Biological name :CSDE1
  
Synonyms : cold shock domain-containing protein E1 / CSDE1
  
Possible biological names infered from orthology : cold shock domain containing E1 / O75534 / Q91W50
  
Species: Gallus gallus
  
Chr. number: 26
Strand: -1
Band:
Gene start: 3912974
Gene end: 3930246
  
Corresponding Affymetrix probe sets: Gga.1829.1.S1_at (Chicken Array)   Gga.4570.1.S1_at (Chicken Array)   GgaAffx.25406.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000039235
NCBI entrez gene - 419886     See in Manteia.
RefSeq - NM_001030918
RefSeq - XM_015298933
RefSeq - XM_015298934
RefSeq Peptide - NP_001026089
swissprot - E1BQF9
Ensembl - ENSGALG00000002139
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 csde1ENSDARG00000074758Danio rerio
 CSDE1ENSG00000009307Homo sapiens
 Csde1ENSMUSG00000068823Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site
 IPR024642  SUZ-C domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr