ENSG00000009307


Homo sapiens

Features
Gene ID: ENSG00000009307
  
Biological name :CSDE1
  
Synonyms : cold shock domain containing E1 / CSDE1 / O75534
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p13.2
Gene start: 114716913
Gene end: 114758676
  
Corresponding Affymetrix probe sets: 202646_s_at (Human Genome U133 Plus 2.0 Array)   219939_s_at (Human Genome U133 Plus 2.0 Array)   222975_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358543
Ensembl peptide - ENSP00000407724
Ensembl peptide - ENSP00000481762
Ensembl peptide - ENSP00000437159
Ensembl peptide - ENSP00000435185
Ensembl peptide - ENSP00000432958
Ensembl peptide - ENSP00000432805
Ensembl peptide - ENSP00000431770
Ensembl peptide - ENSP00000431562
Ensembl peptide - ENSP00000431297
Ensembl peptide - ENSP00000261443
Ensembl peptide - ENSP00000342408
Ensembl peptide - ENSP00000351329
NCBI entrez gene - 7812     See in Manteia.
OMIM - 191510
RefSeq - NM_001242893
RefSeq - NM_007158
RefSeq - NM_001007553
RefSeq - NM_001130523
RefSeq - NM_001242891
RefSeq - NM_001242892
RefSeq Peptide - NP_001229822
RefSeq Peptide - NP_009089
RefSeq Peptide - NP_001007554
RefSeq Peptide - NP_001123995
RefSeq Peptide - NP_001229820
RefSeq Peptide - NP_001229821
swissprot - O75534
swissprot - E9PLT0
swissprot - E9PLD4
swissprot - E9PKN4
swissprot - E9PJK7
swissprot - A0A1Y8EMC9
swissprot - A0A024R0K2
swissprot - A0A024R0E2
swissprot - E9PNG3
Ensembl - ENSG00000009307
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 csde1ENSDARG00000074758Danio rerio
 CSDE1ENSGALG00000002139Gallus gallus
 Csde1ENSMUSG00000068823Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site
 IPR024642  SUZ-C domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008584 male gonad development TAS
 biological_processGO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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