ENSDARG00000074892


Danio rerio

Features
Gene ID: ENSDARG00000074892
  
Biological name :pde6d
  
Synonyms : pde6d / phosphodiesterase 6D, cGMP-specific, rod, delta
  
Possible biological names infered from orthology : O43924 / O55057 / phosphodiesterase 6D / Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 29693492
Gene end: 29705995
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000125061
Ensembl peptide - ENSDARP00000102162
NCBI entrez gene - 436981     See in Manteia.
RefSeq - NM_001002708
RefSeq Peptide - NP_001002708
swissprot - F8W5K7
swissprot - F1QZ52
ZFIN ID - ZDB-GENE-040718-463
Ensembl - ENSDARG00000074892
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDE6DENSGALG00000033062Gallus gallus
 PDE6DENSG00000156973Homo sapiens
 Pde6dENSMUSG00000026239Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008015  GMP phosphodiesterase, delta subunit
 IPR014756  Immunoglobulin E-set
 IPR017287  Retinal rod rhodopsin-sensitive cGMP 3", 5"-cyclic phosphodiesterase, delta subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0007601 visual perception IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA


Pathways (from Reactome)
Pathway description
ARL13B-mediated ciliary trafficking of INPP5E


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye malformed , abnormal
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 ZFA:0000152 retina retina malformed , abnormal
Show

 ZFA:0000330 cloacal chamber cloacal chamber cystic , abnormal
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 ZFA:0001558 pronephric tubule pronephric tubule distended , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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