ENSDARG00000075016


Danio rerio

Features
Gene ID: ENSDARG00000075016
  
Biological name :apobb.2
  
Synonyms : apobb.2 / apolipoprotein Bb, tandem duplicate 2
  
Possible biological names infered from orthology : APOB / apolipoprotein B / Apolipoprotein B-100 Apolipoprotein B-48 / E9Q414 / P04114
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 53439665
Gene end: 53470252
  
Corresponding Affymetrix probe sets: Dr.22100.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120745
Ensembl peptide - ENSDARP00000144532
NCBI entrez gene - 100330435     See in Manteia.
RefSeq - XM_002665806
swissprot - A5WUQ7
ZFIN ID - ZDB-GENE-070705-554
Ensembl - ENSDARG00000075016
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 APOBENSGALG00000016491Gallus gallus
 APOBENSG00000084674Homo sapiens
 ApobENSMUSG00000020609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
apobb.1 / apolipoprotein Bb, tandem duplicate 1 / APOB* / E9Q414* / P04114* / apolipoprotein B* / Apolipoprotein B-100 Apolipoprotein B-48*ENSDARG0000002276743
apoba / apolipoprotein Ba / APOB* / E9Q414* / P04114* / apolipoprotein B* / Apolipoprotein B-100 Apolipoprotein B-48*ENSDARG0000004278033


Protein motifs (from Interpro)
Interpro ID Name
 IPR001747  Lipid transport protein, N-terminal
 IPR009454  Lipid transport, open beta-sheet
 IPR011030  Lipovitellin-phosvitin complex, superhelical domain
 IPR015255  Vitellinogen, open beta-sheet
 IPR015816  Vitellinogen, beta-sheet N-terminal
 IPR015817  Vitellinogen, open beta-sheet, subdomain 1
 IPR015819  Lipid transport protein, beta-sheet shell


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 molecular_functionGO:0005319 lipid transporter activity IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors
Scavenging by Class A Receptors
Scavenging by Class H Receptors
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Platelet sensitization by LDL
Regulation of TLR by endogenous ligand
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
VLDL assembly
Post-translational protein phosphorylation
Chylomicron assembly
Chylomicron remodeling
Chylomicron clearance
LDL clearance
LDL remodeling
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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