ENSDARG00000075297


Danio rerio

Features
Gene ID: ENSDARG00000075297
  
Biological name :trnt1
  
Synonyms : tRNA nucleotidyl transferase, CCA-adding, 1 / trnt1
  
Possible biological names infered from orthology : CCA tRNA nucleotidyltransferase 1, mitochondrial / Q8K1J6 / Q96Q11 / tRNA nucleotidyl transferase 1
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 43222524
Gene end: 43233700
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000097969
Ensembl peptide - ENSDARP00000157125
NCBI entrez gene - 415249     See in Manteia.
RefSeq - NM_001002159
RefSeq - XM_005166030
RefSeq Peptide - NP_001002159
swissprot - F6NXI9
ZFIN ID - ZDB-GENE-040625-176
Ensembl - ENSDARG00000075297
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRNT1ENSGALG00000017368Gallus gallus
 TRNT1ENSG00000072756Homo sapiens
 Trnt1ENSMUSG00000013736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002646  Poly A polymerase, head domain
 IPR032828  tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0001966 thigmotaxis IMP
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0007632 visual behavior IMP
 biological_processGO:0008033 tRNA processing IMP
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0000243 neuromast neuromast decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head decreased width , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton morphology , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch morphology , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr