ENSMUSG00000013736


Mus musculus

Features
Gene ID: ENSMUSG00000013736
  
Biological name :Trnt1
  
Synonyms : CCA tRNA nucleotidyltransferase 1, mitochondrial / Q8K1J6 / Trnt1
  
Possible biological names infered from orthology : Q96Q11 / tRNA nucleotidyl transferase 1
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E1
Gene start: 106769120
Gene end: 106782474
  
Corresponding Affymetrix probe sets: 10540391 (MoGene1.0st)   1425561_at (Mouse Genome 430 2.0 Array)   1425562_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060900
Ensembl peptide - ENSMUSP00000108875
Ensembl peptide - ENSMUSP00000144943
Ensembl peptide - ENSMUSP00000144850
Ensembl peptide - ENSMUSP00000108873
Ensembl peptide - ENSMUSP00000108874
NCBI entrez gene - 70047     See in Manteia.
MGI - MGI:1917297
RefSeq - XM_006506581
RefSeq - XM_006506582
RefSeq - NM_001242358
RefSeq - NM_001242360
RefSeq - NM_027296
RefSeq Peptide - NP_001229287
RefSeq Peptide - NP_001229289
RefSeq Peptide - NP_081572
swissprot - Q8K1J6
swissprot - A0A0N4SV41
swissprot - A0A0N4SUW4
Ensembl - ENSMUSG00000013736
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trnt1ENSDARG00000075297Danio rerio
 TRNT1ENSGALG00000017368Gallus gallus
 TRNT1ENSG00000072756Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002646  Poly A polymerase, head domain
 IPR032828  tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001680 tRNA 3"-terminal CCA addition ISO
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008033 tRNA processing ISO
 biological_processGO:1990180 mitochondrial tRNA 3"-end processing IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005739 mitochondrion ISO
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0009022 tRNA nucleotidyltransferase activity ISO
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0052927 CTP:tRNA cytidylyltransferase activity IEA
 molecular_functionGO:0052928 CTP:3"-cytidine-tRNA cytidylyltransferase activity IEA
 molecular_functionGO:0052929 ATP:3"-cytidine-cytidine-tRNA adenylyltransferase activity ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001260 increased body weight "greater than normal average weight " [J:33400]
Show

Allelic Composition: Tcf7tm1a(EUCOMM)Wtsi/Tcf7tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Tcf7tm1a(EUCOMM)Wtsi/Ics

 MP:0002965 hyperalbuminemia "blood albumin concentration above the normal range" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, RGD:Rat Genome Database submission]
Show

Allelic Composition: Tcf7tm1a(EUCOMM)Wtsi/Tcf7tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Tcf7tm1a(EUCOMM)Wtsi/Ics

 MP:0005642 decreased mean corpuscular hemoglobin concentration "less than the normal Hgb/Hct; the average hemoglobin concentration in a given volume of packed red cells, calculated from the hemoglobin therein and the hematocrit, in erythrocyte indices" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:8936]
Show

Allelic Composition: Tcf7tm1a(EUCOMM)Wtsi/Tcf7tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Tcf7tm1a(EUCOMM)Wtsi/Ics

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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