ENSG00000072756


Homo sapiens

Features
Gene ID: ENSG00000072756
  
Biological name :TRNT1
  
Synonyms : Q96Q11 / tRNA nucleotidyl transferase 1 / TRNT1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p26.2
Gene start: 3126916
Gene end: 3150879
  
Corresponding Affymetrix probe sets: 1552625_a_at (Human Genome U133 Plus 2.0 Array)   222754_at (Human Genome U133 Plus 2.0 Array)   223814_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000388615
Ensembl peptide - ENSP00000415100
Ensembl peptide - ENSP00000400394
Ensembl peptide - ENSP00000251607
Ensembl peptide - ENSP00000280591
Ensembl peptide - ENSP00000342985
Ensembl peptide - ENSP00000380881
Ensembl peptide - ENSP00000385745
NCBI entrez gene - 51095     See in Manteia.
OMIM - 612907
RefSeq - XM_011533776
RefSeq - XM_011533778
RefSeq - NM_001302946
RefSeq - NM_182916
RefSeq - XM_011533777
RefSeq Peptide - NP_001289875
RefSeq Peptide - NP_886552
swissprot - Q96Q11
swissprot - C9JRS7
swissprot - F8W8C3
Ensembl - ENSG00000072756
  
Related genetic diseases (OMIM): 616084 - Sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay, 616084
  616959 - Retinitis pigmentosa and erythrocytic microcytosis, 616959
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trnt1ENSDARG00000075297Danio rerio
 TRNT1ENSGALG00000017368Gallus gallus
 Trnt1ENSMUSG00000013736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002646  Poly A polymerase, head domain
 IPR032828  tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001680 tRNA 3"-terminal CCA addition IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0042780 tRNA 3"-end processing TAS
 biological_processGO:1990180 mitochondrial tRNA 3"-end processing TAS
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000049 tRNA binding IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005524 ATP binding TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0034062 5"-3" RNA polymerase activity TAS
 molecular_functionGO:0052927 CTP:tRNA cytidylyltransferase activity IEA
 molecular_functionGO:0052928 CTP:3"-cytidine-tRNA cytidylyltransferase activity IEA
 molecular_functionGO:0052929 ATP:3"-cytidine-cytidine-tRNA adenylyltransferase activity IEA


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus
tRNA processing in the mitochondrion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000121 Nephrocalcinosis 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000543 Pale optic disks 
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 HP:0000545 Myopia 
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 HP:0000662 Night blindness 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001638 Cardiomyopathy 
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 HP:0001903 Anemia 
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 HP:0001924 Sideroblastic anemia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002299 Fine, brittle hair 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003828 Variable expressivity 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004445 Elliptocytosis 
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 HP:0004840 hypochromic, microcytic anemia 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0011273 Anisocytosis "Abnormally increased variability in the size of erythrocytes." [HPO:probinson]
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 HP:0025066 Decreased mean corpuscular volume "A reduction from normal of the mean corpuscular volume, or mean cell volume (MCV) of red blood cells (usually defined as an MCV below 80 femtoliters)." []
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 HP:0030529 Ring scotoma 
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 HP:0030609 Photoreceptor layer loss on macular OCT "Loss of the outer nuclear layer (photoreceptor layer) as assessed by ocular coherence tomography." [HPO:probinson]
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 HP:0040303 Decreased serum iron 
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 HP:0100014 Epiretinal membrane "An epiretinal membrane is a thin sheet of fibrous tissue that can develop on the surface of the macular area of the retina and cause a disturbance in vision. An epiretinal membrane area can develop on the thin macular area of the retin. An epiretinal membrane is also sometimes called a macular pucker, premacular fibrosis, surface wrinkling retinopathy or cellophane maculopathy." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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