ENSDARG00000076283


Danio rerio

Features
Gene ID: ENSDARG00000076283
  
Biological name :snrpd3l
  
Synonyms : small nuclear ribonucleoprotein D3 polypeptide, like / snrpd3l
  
Possible biological names infered from orthology : P62318 / P62320 / small nuclear ribonucleoprotein D3 / small nuclear ribonucleoprotein D3 polypeptide / SNRPD3
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 13327527
Gene end: 13331030
  
Corresponding Affymetrix probe sets: Dr.3953.1.S1_at (Zebrafish Array)   NM_199760_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000100216
Ensembl peptide - ENSDARP00000150466
NCBI entrez gene - 327011     See in Manteia.
RefSeq - NM_199760
RefSeq Peptide - NP_956054
swissprot - Q7ZVB5
ZFIN ID - ZDB-GENE-030131-5219
Ensembl - ENSDARG00000076283
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPD3ENSGALG00000006596Gallus gallus
 P62318ENSG00000100028Homo sapiens
 P62320ENSMUSG00000020180Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snrpd3 / small nuclear ribonucleoprotein D3 polypeptide / P62318* / P62320* / small nuclear ribonucleoprotein D3*ENSDARG0000001380094


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034099  Small nuclear ribonucleoprotein Sm D3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0034715 pICln-Sm protein complex IBA
 cellular_componentGO:0034719 SMN-Sm protein complex IBA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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