ENSMUSG00000020180


Mus musculus

Features
Gene ID: ENSMUSG00000020180
  
Biological name :Snrpd3
  
Synonyms : P62320 / small nuclear ribonucleoprotein D3 / Snrpd3
  
Possible biological names infered from orthology : P62318 / small nuclear ribonucleoprotein D3 polypeptide
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: C1
Gene start: 75517551
Gene end: 75537381
  
Corresponding Affymetrix probe sets: 10364051 (MoGene1.0st)   1422884_at (Mouse Genome 430 2.0 Array)   1422885_at (Mouse Genome 430 2.0 Array)   1449629_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000151655
Ensembl peptide - ENSMUSP00000020397
NCBI entrez gene - 67332     See in Manteia.
MGI - MGI:1914582
RefSeq - NM_026095
RefSeq Peptide - NP_080371
swissprot - A0A1W2P7K5
swissprot - P62320
Ensembl - ENSMUSG00000020180
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpd3ENSDARG00000013800Danio rerio
 snrpd3lENSDARG00000076283Danio rerio
 SNRPD3ENSGALG00000006596Gallus gallus
 P62318ENSG00000100028Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034099  Small nuclear ribonucleoprotein Sm D3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006479 protein methylation IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030620 U2 snRNA binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IEA
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IDA
 molecular_functionGO:0071209 U7 snRNA binding IEA
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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