ENSG00000100028


Homo sapiens

Features
Gene ID: ENSG00000100028
  
Biological name :SNRPD3
  
Synonyms : P62318 / small nuclear ribonucleoprotein D3 polypeptide / SNRPD3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q11.23
Gene start: 24555503
Gene end: 24609980
  
Corresponding Affymetrix probe sets: 202567_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000215829
Ensembl peptide - ENSP00000385266
Ensembl peptide - ENSP00000456090
Ensembl peptide - ENSP00000456969
NCBI entrez gene - 6634     See in Manteia.
OMIM - 601062
RefSeq - NM_001278656
RefSeq - NM_004175
RefSeq Peptide - NP_001265585
RefSeq Peptide - NP_004166
swissprot - P62318
swissprot - H3BT13
Ensembl - ENSG00000100028
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpd3ENSDARG00000013800Danio rerio
 snrpd3lENSDARG00000076283Danio rerio
 SNRPD3ENSGALG00000006596Gallus gallus
 P62320ENSMUSG00000020180Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034099  Small nuclear ribonucleoprotein Sm D3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006479 protein methylation IDA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IDA
 cellular_componentGO:0005685 U1 snRNP IDA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IDA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005697 telomerase holoenzyme complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0034709 methylosome IDA
 cellular_componentGO:0034715 pICln-Sm protein complex IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0030620 U2 snRNA binding IPI
 molecular_functionGO:0070034 telomerase RNA binding IPI
 molecular_functionGO:0071208 histone pre-mRNA DCP binding ISS
 molecular_functionGO:0071209 U7 snRNA binding IPI
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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