ENSDARG00000076411


Danio rerio

Features
Gene ID: ENSDARG00000076411
  
Biological name :cavin1a
  
Synonyms : caveolae associated protein 1a / cavin1a
  
Possible biological names infered from orthology : caveolae associated protein 1 / CAVIN1 / O54724 / Q6NZI2
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 16976095
Gene end: 17012340
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099909
NCBI entrez gene - 557070     See in Manteia.
RefSeq - XM_001920667
swissprot - E7F0K3
ZFIN ID - ZDB-GENE-091204-151
Ensembl - ENSDARG00000076411
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTRFENSGALG00000003261Gallus gallus
 CAVIN1ENSG00000177469Homo sapiens
 Cavin1ENSMUSG00000004044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cavin1b / caveolae associated protein 1b / CAVIN1* / O54724* / Q6NZI2* / caveolae associated protein 1*ENSDARG0000005936248
cavin2b / caveolae associated protein 2b / Q969G5* / CAVIN2* / CAVIN3* / Q63918* / Q91VJ2* / O95810* / caveolae associated protein 3* / caveolae associated protein 2*ENSDARG0000007119628
cavin4a / caveolae associated protein 4a / CAVIN4* / A2AMM0* / Q5BKX8* / caveolae associated protein 4*ENSDARG0000003865824
cavin2a / caveolae associated protein 2a / Q969G5* / CAVIN2* / CAVIN3* / Q63918* / Q91VJ2* / O95810* / caveolae associated protein 3* / caveolae associated protein 2*ENSDARG0000002761124
cavin4b / caveolae associated protein 4b / CAVIN4* / A2AMM0* / Q5BKX8* / caveolae associated protein 4*ENSDARG0000005674322


Protein motifs (from Interpro)
Interpro ID Name
 IPR026752  Cavin family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005901 caveola IBA
 molecular_functionGO:0008307 structural constituent of muscle IMP


Pathways (from Reactome)
Pathway description
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001115 trunk trunk curved , abnormal
trunk decreased length , abnormal
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 ZFA:0009115 skeletal muscle cell skeletal muscle cell endosome increased amount , abnormal
skeletal muscle cell caveola decreased amount , abnormal
skeletal muscle cell membrane convolute , abnormal
skeletal muscle cell sarcolemma broken , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000035066 ubtf / upstream binding transcription factor, RNA polymerase I / P17480* / Q3USZ2* / P0CB47* / UBTFL1* / upstream binding transcription factor, RNA polymerase I-like 1*  / complex / reaction






 

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