ENSGALG00000003261


Gallus gallus

Features
Gene ID: ENSGALG00000003261
  
Biological name :PTRF
  
Synonyms : polymerase I and transcript release factor / PTRF
  
Possible biological names infered from orthology : caveolae associated protein 1 / CAVIN1 / O54724 / Q6NZI2
  
Species: Gallus gallus
  
Chr. number: 27
Strand: -1
Band:
Gene start: 5335537
Gene end: 5350085
  
Corresponding Affymetrix probe sets: Gga.977.1.S1_at (Chicken Array)   Gga.977.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005155
Ensembl peptide - ENSGALP00000057886
Ensembl peptide - ENSGALP00000005154
NCBI entrez gene - 396006     See in Manteia.
RefSeq - NM_001001471
RefSeq Peptide - NP_001001471
swissprot - A0A1D5PY37
swissprot - Q90838
swissprot - Q90899
Ensembl - ENSGALG00000003261
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cavin1aENSDARG00000076411Danio rerio
 cavin1bENSDARG00000059362Danio rerio
 CAVIN1ENSG00000177469Homo sapiens
 Cavin1ENSMUSG00000004044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CAVIN2* / CAVIN3* / Q969G5* / Q63918* / Q91VJ2* / O95810* / caveolae associated protein 3* / caveolae associated protein 2*ENSGALG0000002817432
CAVIN4 / caveolae associated protein 4 / A2AMM0* / Q5BKX8*ENSGALG0000002645230


Protein motifs (from Interpro)
Interpro ID Name
 IPR026752  Cavin family
 IPR033297  Caveolae-associated protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006361 transcription initiation from RNA polymerase I promoter IEA
 biological_processGO:0006363 termination of RNA polymerase I transcription IEA
 biological_processGO:0009303 rRNA transcription IEA
 biological_processGO:2000147 positive regulation of cell motility IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005901 caveola IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045121 membrane raft IEA
 molecular_functionGO:0042134 rRNA primary transcript binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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