ENSDARG00000076509


Danio rerio

Features
Gene ID: ENSDARG00000076509
  
Biological name :polr2d
  
Synonyms : polr2d / polymerase (RNA) II (DNA directed) polypeptide D
  
Possible biological names infered from orthology : DNA-directed RNA polymerase II subunit RPB4 / O15514 / Q9D7M8 / RNA polymerase II subunit D
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 1124512
Gene end: 1129721
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099022
NCBI entrez gene - 436588     See in Manteia.
RefSeq - NM_001002317
RefSeq Peptide - NP_001002317
swissprot - Q6DRG4
ZFIN ID - ZDB-GENE-040714-2
Ensembl - ENSDARG00000076509
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR2DENSGALG00000002057Gallus gallus
 O15514ENSG00000144231Homo sapiens
 Polr2dENSMUSG00000024258Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005574  RNA polymerase subunit RPB4/RPC9
 IPR006590  RNA polymerase Rpb4/RPC9, core
 IPR010997  HRDC-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0044237 cellular metabolic process IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism necrotic , abnormal
whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001114 head head flat , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr