Manteia

ENSGALG00000002057

Gallus gallus

Features

Gene ID:	ENSGALG00000002057

Biological name :	POLR2D

Synonyms :	POLR2D / RNA polymerase II subunit D

Possible biological names infered from orthology :	DNA-directed RNA polymerase II subunit RPB4 / O15514 / Q9D7M8

Species:	Gallus gallus

Chr. number:	9
Strand:	-1
Band:
Gene start:	1448566
Gene end:	1452013

Corresponding Affymetrix probe sets:	Gga.4766.2.S1_a_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000003195 NCBI entrez gene - 424754 See in Manteia. RefSeq - NM_001277409 RefSeq Peptide - NP_001264338 swissprot - F1P2S1 Ensembl - ENSGALG00000002057

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name

Similarity(%)

No match

Protein motifs (from Interpro)

Interpro ID	Name
IPR002121	HRDC domain
IPR005574	RNA polymerase subunit RPB4/RPC9
IPR006590	RNA polymerase Rpb4/RPC9, core
IPR010997	HRDC-like superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IBA
biological_process	GO:0006351	transcription, DNA-templated	IEA
biological_process	GO:0006366	transcription by RNA polymerase II	IEA
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter	IBA
biological_process	GO:0031990	mRNA export from nucleus in response to heat stress	IBA
biological_process	GO:0034402	recruitment of 3"-end processing factors to RNA polymerase II holoenzyme complex	IBA
biological_process	GO:0044237	cellular metabolic process	IEA
biological_process	GO:0045948	positive regulation of translational initiation	IBA
cellular_component	GO:0000932	P-body	IBA
cellular_component	GO:0005634	nucleus	IEA
cellular_component	GO:0005654	nucleoplasm	IEA
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex	IEA
cellular_component	GO:0005829	cytosol	IEA
cellular_component	GO:0016607	nuclear speck	IEA
molecular_function	GO:0000166	nucleotide binding	IEA
molecular_function	GO:0003697	single-stranded DNA binding	IBA
molecular_function	GO:0003727	single-stranded RNA binding	IBA
molecular_function	GO:0003824	catalytic activity	IEA
molecular_function	GO:0003899	DNA-directed 5"-3" RNA polymerase activity	IBA
molecular_function	GO:0031369	translation initiation factor binding	IBA

Pathways (from Reactome)

Pathway description

Formation of RNA Pol II elongation complex

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr