ENSDARG00000076857


Danio rerio

Features
Gene ID: ENSDARG00000076857
  
Biological name :her3
  
Synonyms : hairy-related 3 / her3
  
Possible biological names infered from orthology : HES3 / hes family bHLH transcription factor 3 / Q5TGS1 / Q61657
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 46641314
Gene end: 46642556
  
Corresponding Affymetrix probe sets: Dr.20143.1.S1_at (Zebrafish Array)   NM_131080_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000099080
NCBI entrez gene - 30289     See in Manteia.
RefSeq - NM_131080
RefSeq Peptide - NP_571155
swissprot - F1RDU0
ZFIN ID - ZDB-GENE-980526-204
Ensembl - ENSDARG00000076857
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HES3ENSG00000173673Homo sapiens
 Hes3ENSMUSG00000028946Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0050768 negative regulation of neurogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000822 rhombomere 2 rhombomere 2 neuron mislocalised , abnormal
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 ZFA:0001032 rhombomere 4 rhombomere 4 neuron mislocalised , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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