ENSDARG00000077751


Danio rerio

Features
Gene ID: ENSDARG00000077751
  
Biological name :nol9
  
Synonyms : nol9 / nucleolar protein 9
  
Possible biological names infered from orthology : Polynucleotide 5-hydroxyl-kinase NOL9 / Q3TZX8 / Q5SY16
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 24954951
Gene end: 24971463
  
Corresponding Affymetrix probe sets: Dr.12637.1.A1_at (Zebrafish Array)   XM_691014_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121057
Ensembl peptide - ENSDARP00000145169
Ensembl peptide - ENSDARP00000123267
NCBI entrez gene - 567715     See in Manteia.
RefSeq - XM_691014
swissprot - E9QCS0
swissprot - E7F654
ZFIN ID - ZDB-GENE-070629-1
Ensembl - ENSDARG00000077751
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOL9ENSGALG00000028958Gallus gallus
 NOL9ENSG00000162408Homo sapiens
 Nol9ENSMUSG00000028948Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032319  Polyribonucleotide 5"-hydroxyl-kinase Clp1, P-loop domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0051731 polynucleotide 5"-hydroxyl-kinase activity IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
Show

 ZFA:0000094 blood island blood island nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0000123 liver liver decreased size , abnormal
liver increased amount , abnormal
Show

 ZFA:0000140 pancreas pancreas decreased size , abnormal
Show

 ZFA:0000180 caudal vein caudal vein endothelial cell swollen , abnormal
Show

 ZFA:0001117 post-vent region post-vent region erythroid progenitor cell decreased amount , abnormal
post-vent region hematopoietic multipotent progenitor cell decreased amount , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas mitochondrion morphology , abnormal
exocrine pancreas mitochondrion increased size , abnormal
exocrine pancreas rough endoplasmic reticulum absent , abnormal
exocrine pancreas zymogen granule decreased size , abnormal
exocrine pancreas zymogen granule decreased amount , abnormal
exocrine pancreas decreased size , abnormal
exocrine pancreas decreased amount , abnormal
Show

 ZFA:0001338 intestine intestine morphology , abnormal
intestine increased amount , abnormal
Show

 ZFA:0001372 pancreatic duct pancreatic duct absent , abnormal
Show

 ZFA:0005023 hematopoietic system hematopoietic system nucleate erythrocyte absent , abnormal
hematopoietic system posterior region increased amount , abnormal
Show

 ZFA:0009250 lymphocyte lymphocyte decreased amount , abnormal
Show

 ZFA:0009354 hematopoietic multipotent progenitor cell hematopoietic multipotent progenitor cell decreased amount , abnormal
hematopoietic multipotent progenitor cell cell proliferation decreased process quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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