ENSMUSG00000028948


Mus musculus

Features
Gene ID: ENSMUSG00000028948
  
Biological name :Nol9
  
Synonyms : Nol9 / Polynucleotide 5-hydroxyl-kinase NOL9 / Q3TZX8
  
Possible biological names infered from orthology : nucleolar protein 9 / Q5SY16
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: E2
Gene start: 152039321
Gene end: 152061494
  
Corresponding Affymetrix probe sets: 10510629 (MoGene1.0st)   1429338_a_at (Mouse Genome 430 2.0 Array)   1432218_a_at (Mouse Genome 430 2.0 Array)   1432219_at (Mouse Genome 430 2.0 Array)   1453114_at (Mouse Genome 430 2.0 Array)   1455330_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000081133
Ensembl peptide - ENSMUSP00000099486
Ensembl peptide - ENSMUSP00000146142
NCBI entrez gene - 74035     See in Manteia.
MGI - MGI:1921285
RefSeq - XM_017320412
RefSeq - NM_001159599
RefSeq - NM_028727
RefSeq - XM_006539208
RefSeq Peptide - NP_083003
RefSeq Peptide - NP_001153071
swissprot - Q3TZX8
swissprot - A0A0U1RPV7
Ensembl - ENSMUSG00000028948
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nol9ENSDARG00000077751Danio rerio
 NOL9ENSGALG00000028958Gallus gallus
 NOL9ENSG00000162408Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR032319  Polyribonucleotide 5"-hydroxyl-kinase Clp1, P-loop domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000460 maturation of 5.8S rRNA IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0016310 phosphorylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0051731 polynucleotide 5"-hydroxyl-kinase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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