ENSDARG00000079012


Danio rerio

Features
Gene ID: ENSDARG00000079012
  
Biological name :cbfa2t3
  
Synonyms : cbfa2t3 / core-binding factor, runt domain, alpha subunit 2; translocated to, 3
  
Possible biological names infered from orthology : CBFA2/RUNX1 translocation partner 3 / O54972 / O75081 / Protein CBFA2T3
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 55660263
Gene end: 55675617
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000009143
Ensembl peptide - ENSDARP00000151083
NCBI entrez gene - 563252     See in Manteia.
swissprot - F1QTJ1
ZFIN ID - ZDB-GENE-070209-2
Ensembl - ENSDARG00000079012
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBFA2T3ENSGALG00000032410Gallus gallus
 O75081ENSG00000129993Homo sapiens
 O54972ENSMUSG00000006362Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
runx1t1 / runt-related transcription factor 1; translocated to, 1 (cyclin D-related) / Q06455* / Q61909* / RUNX1 translocation partner 1*ENSDARG0000000368068
cbfa2t2 / core-binding factor, runt domain, alpha subunit 2; translocated to, 2 / O70374* / O43439* / CBFA2/RUNX1 translocation partner 2* / core-binding factor, runt domain, alpha subunit ...ENSDARG0000007433753
deaf1 / DEAF1 transcription factor / O75398* / Q9Z1T5* / Deformed epidermal autoregulatory factor 1 homolog *ENSDARG0000008884413


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR003894  TAFH/NHR1
 IPR013289  CBFA2T family
 IPR014896  NHR2-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003714 transcription corepressor activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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