ENSDARG00000087779


Danio rerio

Features
Gene ID: ENSDARG00000087779
  
Biological name :pum3
  
Synonyms : pum3 / pumilio RNA-binding family member 3 / X1WGX5
  
Possible biological names infered from orthology : Q15397
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 15321522
Gene end: 15340450
  
Corresponding Affymetrix probe sets: Dr.13286.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121585
Ensembl peptide - ENSDARP00000153216
Ensembl peptide - ENSDARP00000129484
Ensembl peptide - ENSDARP00000108665
NCBI entrez gene - 553068     See in Manteia.
RefSeq - NM_001353848
RefSeq Peptide - NP_001340777
swissprot - E9QJ83
swissprot - E9QFL4
swissprot - X1WGX5
ZFIN ID - ZDB-GENE-030131-9808
Ensembl - ENSDARG00000087779
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PUM3ENSGALG00000010178Gallus gallus
 PUM3ENSG00000080608Homo sapiens
 Pum3ENSMUSG00000041360Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001313  Pumilio RNA-binding repeat
 IPR011989  Armadillo-like helical
 IPR012959  CPL domain
 IPR016024  Armadillo-type fold
 IPR033133  Pumilio homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IBA
 biological_processGO:0008354 germ cell migration IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome ISS
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000152 retina retina immature , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0009288 primordial germ cell primordial germ cell decreased amount , abnormal
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 ZFA:0009321 rod bipolar cell rod bipolar cell disorganized , abnormal
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 ZFA:0009322 cone retinal bipolar cell cone retinal bipolar cell disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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