ENSDARG00000087996


Danio rerio

Features
Gene ID: ENSDARG00000087996
  
Biological name :pabpn1l
  
Synonyms : pabpn1l / poly(A) binding protein, nuclear 1-like (cytoplasmic)
  
Possible biological names infered from orthology : A6NDY0 / poly(A)binding protein nuclear 1-like / Q5XFR0
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 55637379
Gene end: 55648459
  
Corresponding Affymetrix probe sets: Dr.18452.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113118
Ensembl peptide - ENSDARP00000121304
Ensembl peptide - ENSDARP00000118258
NCBI entrez gene - 796580     See in Manteia.
RefSeq - NM_001327845
RefSeq Peptide - NP_001314774
swissprot - E9QGY6
swissprot - E9QBX4
swissprot - E7EZ26
ZFIN ID - ZDB-GENE-080709-5
Ensembl - ENSDARG00000087996
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PABPN1LENSGALG00000006242Gallus gallus
 A6NDY0ENSG00000205022Homo sapiens
 Q5XFR0ENSMUSG00000069867Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pabpn1 / poly(A) binding protein, nuclear 1 / Q92843* / Q86U42* / Q8CCS6* / Gm20521* / BCL2L2-PABPN1* / BCL2L2-PABPN1 readthrough*ENSDARG0000004537356


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034911  Polyadenylate-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1904247 positive regulation of polynucleotide adenylyltransferase activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr