ENSDARG00000045373


Danio rerio

Features
Gene ID: ENSDARG00000045373
  
Biological name :pabpn1
  
Synonyms : pabpn1 / poly(A) binding protein, nuclear 1
  
Possible biological names infered from orthology : BCL2L2-PABPN1 / BCL2L2-PABPN1 readthrough / Gm20521 / Q86U42 / Q8CCS6 / Q92843
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 14559328
Gene end: 14577559
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000113199
Ensembl peptide - ENSDARP00000124946
Ensembl peptide - ENSDARP00000066721
Ensembl peptide - ENSDARP00000100125
NCBI entrez gene - 406543     See in Manteia.
RefSeq - NM_001105132
RefSeq - NM_213259
RefSeq Peptide - NP_001098602
RefSeq Peptide - NP_998424
swissprot - F8W5X1
swissprot - A7YYD9
swissprot - E9QGV8
swissprot - Q6NUT4
ZFIN ID - ZDB-GENE-040426-2401
Ensembl - ENSDARG00000045373
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PABPN1ENSG00000100836Homo sapiens
 Q92843ENSG00000258643Homo sapiens
 Gm20521ENSMUSG00000092232Mus musculus
 Pabpn1ENSMUSG00000022194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pabpn1l / poly(A) binding protein, nuclear 1-like (cytoplasmic) / A6NDY0* / Q5XFR0* / poly(A)binding protein nuclear 1-like*ENSDARG0000008799632


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034911  Polyadenylate-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1904247 positive regulation of polynucleotide adenylyltransferase activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr