ENSG00000100836


Homo sapiens

Features
Gene ID: ENSG00000100836
  
Biological name :PABPN1
  
Synonyms : PABPN1 / poly(A) binding protein nuclear 1 / Q86U42
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q11.2
Gene start: 23321289
Gene end: 23326185
  
Corresponding Affymetrix probe sets: 201544_x_at (Human Genome U133 Plus 2.0 Array)   201545_s_at (Human Genome U133 Plus 2.0 Array)   213046_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451592
Ensembl peptide - ENSP00000451970
Ensembl peptide - ENSP00000216727
Ensembl peptide - ENSP00000380446
Ensembl peptide - ENSP00000450724
NCBI entrez gene - 8106     See in Manteia.
OMIM - 602279
RefSeq - NM_004643
RefSeq Peptide - NP_004634
swissprot - B4DEH8
swissprot - G3V4T2
swissprot - H0YJH9
swissprot - Q86U42
Ensembl - ENSG00000100836
  
Related genetic diseases (OMIM): 164300 - Oculopharyngeal muscular dystrophy, 164300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpn1ENSDARG00000045373Danio rerio
 Pabpn1ENSMUSG00000022194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q92843 / BCL2L2-PABPN1 / BCL2L2-PABPN1 readthroughENSG0000025864369
A6NDY0 / PABPN1L / poly(A) binding protein nuclear 1 like, cytoplasmicENSG0000020502234


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034911  Polyadenylate-binding protein 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade ISS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IMP
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0046778 modification by virus of host mRNA processing TAS
 biological_processGO:0071222 cellular response to lipopolysaccharide ISS
 biological_processGO:1904247 positive regulation of polynucleotide adenylyltransferase activity IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0042405 nuclear inclusion body IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0070063 RNA polymerase binding ISS


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Inhibition of Host mRNA Processing and RNA Silencing
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000467 Neck muscle weakness 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000602 Ophthalmoplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003198 Myopathy 
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003302 Spondylolisthesis 
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003805 Rimmed vacuoles 
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 HP:0007838 Ptosis, progressive 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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