ENSDARG00000088650


Danio rerio

Features
Gene ID: ENSDARG00000088650
  
Biological name :si:ch211-208k15.1
  
Synonyms : si:ch211-208k15.1
  
Possible biological names infered from orthology : Q96NA8 / TSNARE1 / t-SNARE domain containing 1
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 37166572
Gene end: 37470042
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131506
Ensembl peptide - ENSDARP00000133951
Ensembl peptide - ENSDARP00000151629
NCBI entrez gene - 101882035     See in Manteia.
swissprot - A0A0R4IK07
ZFIN ID - ZDB-GENE-100922-189
Ensembl - ENSDARG00000088650
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSNARE1ENSGALG00000037014Gallus gallus
 Q96NA8ENSG00000171045Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx12l / syntaxin 12, like / STX12* / Q9ER00* / Q86Y82* / syntaxin 12*ENSDARG0000004460526
stx12 / syntaxin 12 / Q86Y82* / Q9ER00*ENSDARG0000009881325
stx7l / syntaxin 7-like / STX7* / O15400* / syntaxin 7*ENSDARG0000006920823


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006011  Syntaxin, N-terminal domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0061025 membrane fusion IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005484 SNAP receptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr