ENSDARG00000090170


Danio rerio

Features
Gene ID: ENSDARG00000090170
  
Biological name :rab11fip4a
  
Synonyms : Q3LGD4 / RAB11 family interacting protein 4 (class II) a / rab11fip4a
  
Possible biological names infered from orthology : Q86YS3 / Q8BQP8 / RAB11 family interacting protein 4 / RAB11FIP4
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 36023268
Gene end: 36115354
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000108296
Ensembl peptide - ENSDARP00000125923
Ensembl peptide - ENSDARP00000146093
NCBI entrez gene - 436806     See in Manteia.
RefSeq - NM_001002533
RefSeq Peptide - NP_001002533
swissprot - I3ISN7
swissprot - Q3LGD4
ZFIN ID - ZDB-GENE-040718-266
Ensembl - ENSDARG00000090170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB11FIP4ENSGALG00000003227Gallus gallus
 Q86YS3ENSG00000131242Homo sapiens
 Q8BQP8ENSMUSG00000017639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
B3DGU2 / rab11fip4b / RAB11 family interacting protein 4 (class II) b / Q8BQP8* / Q86YS3* / RAB11FIP4* / RAB11 family interacting protein 4*ENSDARG0000010320755
Q7T005 / rab11fip3 / RAB11 family interacting protein 3 (class II)ENSDARG0000001649035


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR004827  Basic-leucine zipper domain
 IPR011992  EF-hand domain pair
 IPR019018  Rab-binding domain FIP-RBD


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0032465 regulation of cytokinesis ISS
 biological_processGO:0048592 eye morphogenesis IMP
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005768 endosome ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030139 endocytic vesicle ISS
 cellular_componentGO:0030496 midbody ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032154 cleavage furrow ISS
 cellular_componentGO:0055038 recycling endosome membrane ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0017137 Rab GTPase binding ISS
 molecular_functionGO:0030306 ADP-ribosylation factor binding ISS
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain apoptotic , abnormal
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 ZFA:0000075 spinal cord spinal cord apoptotic , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000152 retina retina cell decreased amount , abnormal
retina apoptotic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton physical object quality , abnormal
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 ZFA:0009255 amacrine cell amacrine cell decreased amount , abnormal
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 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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