ENSDARG00000091367


Danio rerio

Features
Gene ID: ENSDARG00000091367
  
Biological name :prpf6
  
Synonyms : PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) / prpf6
  
Possible biological names infered from orthology : O94906 / pre-mRNA processing factor 6 / Q91YR7
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 6998633
Gene end: 7052412
  
Corresponding Affymetrix probe sets: Dr.5658.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105670
Ensembl peptide - ENSDARP00000145312
NCBI entrez gene - 323855     See in Manteia.
swissprot - F1QY65
swissprot - Q6NYK7
ZFIN ID - ZDB-GENE-030131-2575
Ensembl - ENSDARG00000091367
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPF6ENSGALG00000006001Gallus gallus
 PRPF6ENSG00000101161Homo sapiens
 Prpf6ENSMUSG00000002455Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR010491  PRP1 splicing factor, N-terminal
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR027108  Pre-mRNA-processing factor 6/Prp1/STA1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr