ENSGALG00000006001


Gallus gallus

Features
Gene ID: ENSGALG00000006001
  
Biological name :PRPF6
  
Synonyms : pre-mRNA processing factor 6 / PRPF6
  
Possible biological names infered from orthology : O94906 / Q91YR7
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 9613932
Gene end: 9636709
  
Corresponding Affymetrix probe sets: Gga.5457.1.S1_at (Chicken Array)   GgaAffx.26697.1.S1_at (Chicken Array)   GgaAffx.26697.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009642
Ensembl peptide - ENSGALP00000061667
Ensembl peptide - ENSGALP00000046049
NCBI entrez gene - 419254     See in Manteia.
RefSeq - XM_417426
swissprot - A0A1L1RS86
swissprot - A0A1D5P075
swissprot - F1N9U0
Ensembl - ENSGALG00000006001
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf6ENSDARG00000091367Danio rerio
 PRPF6ENSG00000101161Homo sapiens
 Prpf6ENSMUSG00000002455Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR010491  PRP1 splicing factor, N-terminal
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006403 RNA localization IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005682 U5 snRNP IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA
 molecular_functionGO:0050681 androgen receptor binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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