ENSDARG00000091656


Danio rerio

Features
Gene ID: ENSDARG00000091656
  
Biological name :lsm8
  
Synonyms : lsm8 / LSM8 homolog, U6 small nuclear RNA associated
  
Possible biological names infered from orthology : O95777 / Q6ZWM4 / U6 snRNA-associated Sm-like protein LSm8
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 9536860
Gene end: 9539424
  
Corresponding Affymetrix probe sets: Dr.17055.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000104545
NCBI entrez gene - 566017     See in Manteia.
RefSeq - NM_001302466
RefSeq Peptide - NP_001289395
swissprot - E7EZ02
ZFIN ID - ZDB-GENE-070629-3
Ensembl - ENSDARG00000091656
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM8ENSGALG00000009110Gallus gallus
 LSM8ENSG00000128534Homo sapiens
 Lsm8ENSMUSG00000044155Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034103  Sm-like protein Lsm8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0008380 RNA splicing IMP
 biological_processGO:0030217 T cell differentiation IMP
 cellular_componentGO:0005688 U6 snRNP IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
Show

 ZFA:0001078 thymus thymus decreased amount , abnormal
thymus lymphoid progenitor cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr