ENSGALG00000009110


Gallus gallus

Features
Gene ID: ENSGALG00000009110
  
Biological name :LSM8
  
Synonyms : LSM8 / LSM8 homolog, U6 small nuclear RNA associated
  
Possible biological names infered from orthology : O95777 / Q6ZWM4 / U6 snRNA-associated Sm-like protein LSm8
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 24348924
Gene end: 24354638
  
Corresponding Affymetrix probe sets: Gga.16988.1.S1_at (Chicken Array)   Gga.6283.1.S1_at (Chicken Array)   Gga.6283.1.S1_s_at (Chicken Array)   GgaAffx.20613.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014820
NCBI entrez gene - 417765     See in Manteia.
RefSeq - NM_001277355
RefSeq Peptide - NP_001264284
swissprot - E1BZ75
Ensembl - ENSGALG00000009110
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm8ENSDARG00000091656Danio rerio
 LSM8ENSG00000128534Homo sapiens
 Lsm8ENSMUSG00000044155Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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