ENSG00000128534


Homo sapiens

Features
Gene ID: ENSG00000128534
  
Biological name :LSM8
  
Synonyms : LSM8 / LSM8 homolog, U6 small nuclear RNA associated / O95777
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q31.31
Gene start: 118184032
Gene end: 118192824
  
Corresponding Affymetrix probe sets: 219119_at (Human Genome U133 Plus 2.0 Array)   228529_at (Human Genome U133 Plus 2.0 Array)   230020_at (Human Genome U133 Plus 2.0 Array)   235470_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000249299
Ensembl peptide - ENSP00000408267
Ensembl peptide - ENSP00000403811
Ensembl peptide - ENSP00000395263
NCBI entrez gene - 51691     See in Manteia.
OMIM - 607288
RefSeq - NM_016200
RefSeq Peptide - NP_057284
swissprot - F2Z2Y6
swissprot - C9JNV3
swissprot - O95777
swissprot - C9JIZ0
swissprot - A4D0W0
Ensembl - ENSG00000128534
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm8ENSDARG00000091656Danio rerio
 LSM8ENSGALG00000009110Gallus gallus
 Lsm8ENSMUSG00000044155Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034103  Sm-like protein Lsm8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017070 U6 snRNA binding NAS


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

5 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr