ENSDARG00000093945


Danio rerio

Features
Gene ID: ENSDARG00000093945
  
Biological name :vma21
  
Synonyms : B8JLV7 / vma21 / VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
  
Possible biological names infered from orthology : Q3ZAQ7 / Q78T54 / Vma21-ps / VMA21, vacuolar ATPase assembly factor / VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 22677786
Gene end: 22684015
  
Corresponding Affymetrix probe sets: Dr.11056.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117667
NCBI entrez gene - 100307085     See in Manteia.
RefSeq - NM_001202424
RefSeq Peptide - NP_001189353
swissprot - B8JLV7
ZFIN ID - ZDB-GENE-081104-272
Ensembl - ENSDARG00000093945
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VMA21ENSGALG00000009065Gallus gallus
 VMA21ENSG00000160131Homo sapiens
 Vma21ENSMUSG00000073131Mus musculus
 Vma21-psENSMUSG00000061619Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019013  Vacuolar ATPase assembly integral membrane protein Vma21


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr