ENSDARG00000097302


Danio rerio

Features
Gene ID: ENSDARG00000097302
  
Biological name :tbpl2
  
Synonyms : Q1JPY4 / TATA box binding protein like 2 / tbpl2
  
Possible biological names infered from orthology : Q6SJ95 / Q6SJ96 / TATA box-binding protein-like protein 2
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 10738126
Gene end: 10747553
  
Corresponding Affymetrix probe sets: Dr.16024.1.A1_at (Zebrafish Array)   NM_214796_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000051526
NCBI entrez gene - 407713     See in Manteia.
RefSeq - XM_005169810
RefSeq - NM_214796
RefSeq Peptide - NP_999961
swissprot - Q1JPY4
swissprot - B2GNU4
ZFIN ID - ZDB-GENE-040520-3
Ensembl - ENSDARG00000097302
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBPL2ENSGALG00000012145Gallus gallus
 TBPL2ENSG00000182521Homo sapiens
 Tbpl2ENSMUSG00000061809Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbp / Q7SXL3 / TATA box binding protein / P20226* / P29037*ENSDARG0000001499463
tbpl1 / Q5U385 / TBP-like 1 / P62380* / P62340* / TATA-box binding protein like 1* / TATA box-binding protein-like protein 1 *ENSDARG0000003686822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000814  TATA-box binding protein
 IPR030491  TATA-box binding protein, conserved site
 IPR033710  TATA-box binding protein, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IDA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009792 embryo development ending in birth or egg hatching IMP
 biological_processGO:0009880 embryonic pattern specification IMP
 biological_processGO:0030097 hemopoiesis IMP
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm erythroid lineage cell decreased amount , abnormal
Show

 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm erythroid progenitor cell decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism necrotic , abnormal
Show

 ZFA:0001115 trunk trunk curvature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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