ENSDARG00000097660


Danio rerio

Features
Gene ID: ENSDARG00000097660
  
Biological name :trappc2
  
Synonyms : Q08CN0 / trafficking protein particle complex 2 / trappc2
  
Possible biological names infered from orthology : 0610009B22Rik / P0DI81 / P0DI82 / Q9CQP2 / RIKEN cDNA 0610009B22 gene / trafficking protein particle complex 2B / Trafficking protein particle complex subunit 2 / TRAPPC2B
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 54710916
Gene end: 54716390
  
Corresponding Affymetrix probe sets: Dr.16486.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136695
Ensembl peptide - ENSDARP00000137076
NCBI entrez gene - 767808     See in Manteia.
RefSeq - NM_001320115
RefSeq Peptide - NP_001307044
swissprot - B2GS81
swissprot - A0A0R4IMU2
swissprot - Q08CN0
ZFIN ID - ZDB-GENE-060929-1266
Ensembl - ENSDARG00000097660
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAPPC2ENSGALG00000016578Gallus gallus
 P0DI81ENSG00000196459Homo sapiens
 P0DI82ENSG00000256060Homo sapiens
 0610009B22RikENSMUSG00000007777Mus musculus
 Q9CQP2ENSMUSG00000079317Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006722  Trafficking protein particle complex subunit 2
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr