Manteia

ENSMUSG00000079317

Mus musculus

Features

Gene ID:	ENSMUSG00000079317

Biological name :	Trappc2

Synonyms :	Q9CQP2 / Trafficking protein particle complex subunit 2 / Trappc2

Possible biological names infered from orthology :	P0DI81 / P0DI82 / trafficking protein particle complex 2 / trafficking protein particle complex 2B / TRAPPC2B

Species:	Mus musculus

Chr. number:	X
Strand:	1
Band:	F5
Gene start:	166440574
Gene end:	166453140

Corresponding Affymetrix probe sets:	10518167 (MoGene1.0st) 10603166 (MoGene1.0st) 1432158_a_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000107811 Ensembl peptide - ENSMUSP00000107813 Ensembl peptide - ENSMUSP00000112195 NCBI entrez gene - 66226 See in Manteia. MGI - MGI:1913476 RefSeq - NM_001313722 RefSeq - NM_025432 RefSeq Peptide - NP_001300651 RefSeq Peptide - NP_079708 swissprot - Q9CQP2 swissprot - Q5J9A9 swissprot - A2AFP1 Ensembl - ENSMUSG00000079317

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
0610009B22Rik / RIKEN cDNA 0610009B22 gene / P0DI82* / P0DI81* / TRAPPC2* / TRAPPC2B* / trafficking protein particle complex 2* / trafficking protein particle complex 2B*	ENSMUSG00000007777	96

Protein motifs (from Interpro)

Interpro ID	Name
IPR006722	Trafficking protein particle complex subunit 2
IPR011012	Longin-like domain superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0001501	skeletal system development	ISO
biological_process	GO:0006351	transcription, DNA-templated	IEA
biological_process	GO:0006355	regulation of transcription, DNA-templated	ISO
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport	IEA
biological_process	GO:0016192	vesicle-mediated transport	IEA
cellular_component	GO:0005622	intracellular	IEA
cellular_component	GO:0005634	nucleus	ISO
cellular_component	GO:0005654	nucleoplasm	ISO
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005783	endoplasmic reticulum	ISO
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	IEA
cellular_component	GO:0030008	TRAPP complex	ISO
cellular_component	GO:0043231	intracellular membrane-bounded organelle	ISO
cellular_component	GO:0048471	perinuclear region of cytoplasm	IEA
molecular_function	GO:0005515	protein binding	IPI
molecular_function	GO:0008134	transcription factor binding	ISS
molecular_function	GO:0044325	ion channel binding	ISO

Pathways (from Reactome)

Pathway description

COPII-mediated vesicle transport

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0001489	decreased startle reflex	"greater threshold or less severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, What s Wrong With My Mouse?:ISBN 0-471-31639-3]	Show Allelic Composition: Tmem79^{tm1.1(KOMP)Wtsi}/Tmem79^{tm1.1(KOMP)Wtsi} Genetic Background: C57BL/6N-Tmem79^{tm1.1(KOMP)Wtsi}/J
MP:0009709	hydrometra	"an accumulation in the uterine lumen of normal secretions that ordinarily drain from the body but are retained when the cervix or vagina is significantly or completely closed" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]	Show Allelic Composition: Tmem79^{tm1.1(KOMP)Wtsi}/Tmem79^{tm1.1(KOMP)Wtsi} Genetic Background: C57BL/6N-Tmem79^{tm1.1(KOMP)Wtsi}/J

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr