ENSDARG00000098825


Danio rerio

Features
Gene ID: ENSDARG00000098825
  
Biological name :farsa
  
Synonyms : farsa / phenylalanyl-tRNA synthetase, alpha subunit / Q1JPX3
  
Possible biological names infered from orthology : Phenylalanine--tRNA ligase alpha subunit / Q8C0C7 / Q9Y285
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 13879446
Gene end: 13901074
  
Corresponding Affymetrix probe sets: Dr.8004.1.A1_at (Zebrafish Array)   NM_001045295_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132548
NCBI entrez gene - 692329     See in Manteia.
RefSeq - NM_001045295
RefSeq Peptide - NP_001038760
swissprot - Q1JPX3
ZFIN ID - ZDB-GENE-050512-2
Ensembl - ENSDARG00000098825
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FARSAENSGALG00000040258Gallus gallus
 FARSAENSG00000179115Homo sapiens
 FarsaENSMUSG00000003808Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002319  Phenylalanyl-tRNA synthetase
 IPR004529  Phenylalanyl-tRNA synthetase, class IIc, alpha subunit
 IPR006195  Aminoacyl-tRNA synthetase, class II
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006432 phenylalanyl-tRNA aminoacylation ISS
 biological_processGO:0043039 tRNA aminoacylation IEA
 biological_processGO:0051290 protein heterotetramerization ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0009328 phenylalanine-tRNA ligase complex ISS
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004826 phenylalanine-tRNA ligase activity ISS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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