ENSDARG00000099256


Danio rerio

Features
Gene ID: ENSDARG00000099256
  
Biological name :pum1
  
Synonyms : pum1 / pumilio RNA-binding family member 1
  
Possible biological names infered from orthology : Q14671 / Q80U78
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 43037657
Gene end: 43090728
  
Corresponding Affymetrix probe sets: Dr.16492.1.A1_at (Zebrafish Array)   Dr.2089.1.S1_at (Zebrafish Array)   Dr.2089.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131349
Ensembl peptide - ENSDARP00000149400
Ensembl peptide - ENSDARP00000141593
Ensembl peptide - ENSDARP00000140793
NCBI entrez gene - 394176     See in Manteia.
RefSeq - NM_001277119
RefSeq Peptide - NP_001264048
swissprot - A0A0R4IZ63
swissprot - A0A0R4IWL6
swissprot - A0A0R4IE22
ZFIN ID - ZDB-GENE-030131-2074
Ensembl - ENSDARG00000099256
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PUM1ENSGALG00000042598Gallus gallus
 PUM1ENSG00000134644Homo sapiens
 Pum1ENSMUSG00000028580Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pum2 / pumilio RNA-binding family member 2 / Q80U58* / Q8TB72*ENSDARG0000006104065


Protein motifs (from Interpro)
Interpro ID Name
 IPR001313  Pumilio RNA-binding repeat
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR033133  Pumilio homology domain
 IPR033712  Pumilio, RNA binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr