ENSGALG00000042598


Gallus gallus

Features
Gene ID: ENSGALG00000042598
  
Biological name :PUM1
  
Synonyms : PUM1 / Pumilio homolog 1 / Q2VB19
  
Possible biological names infered from orthology : pumilio RNA binding family member 1 / Q14671 / Q80U78
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 462903
Gene end: 531614
  
Corresponding Affymetrix probe sets: Gga.16453.1.S1_at (Chicken Array)   Gga.5764.1.S1_s_at (Chicken Array)   GgaAffx.26373.1.A1_at (Chicken Array)   GgaAffx.26443.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055364
Ensembl peptide - ENSGALP00000046081
NCBI entrez gene - 419554     See in Manteia.
RefSeq - XM_015297542
RefSeq - NM_001012840
RefSeq - XM_015297539
RefSeq - XM_015297540
RefSeq - XM_015297541
RefSeq - XM_015297531
RefSeq - XM_015297532
RefSeq - XM_015297533
RefSeq - XM_015297534
RefSeq - XM_015297535
RefSeq - XM_015297537
RefSeq - XM_015297538
RefSeq Peptide - NP_001012858
swissprot - Q2VB19
swissprot - A0A1D5PR43
Ensembl - ENSGALG00000042598
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pum1ENSDARG00000099256Danio rerio
 PUM1ENSG00000134644Homo sapiens
 Pum1ENSMUSG00000028580Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PUM2 / pumilio homolog 2 / Q80U58* / Q8TB72* / pumilio RNA binding family member 2*ENSGALG0000001648170


Protein motifs (from Interpro)
Interpro ID Name
 IPR001313  Pumilio RNA-binding repeat
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR033133  Pumilio homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008344 adult locomotory behavior ISS
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0016441 posttranscriptional gene silencing ISS
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0048863 stem cell differentiation ISS
 biological_processGO:0051726 regulation of cell cycle ISS
 biological_processGO:0051983 regulation of chromosome segregation IEA
 biological_processGO:0061157 mRNA destabilization ISS
 biological_processGO:1900246 positive regulation of RIG-I signaling pathway IEA
 biological_processGO:2000637 positive regulation of gene silencing by miRNA ISS
 cellular_componentGO:0000932 P-body ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding ISS
 molecular_functionGO:0035198 miRNA binding IEA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000007220 FTH1 / P08267 / Ferritin heavy chain / P02794* / P09528* / ferritin heavy chain 1* / Ferritin heavy chain Ferritin heavy chain, N-terminally processed*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr